PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056242-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 288aa    MW: 32335.4 Da    PI: 4.8865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056242-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-108322146
                      TT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqk 46
                      + +W++Ia++++ gRt++++k++w++
  PSME_00056242-RA  8 NCRWSAIASHIP-GRTDNDIKNHWHS 32
                      345*********.***********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.744138IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-11838IPR009057Homeodomain-like
SuperFamilySSF466894.06E-8841IPR009057Homeodomain-like
PfamPF002491.9E-7932IPR001005SANT/Myb domain
CDDcd001672.56E-61034No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSCTTLLNCR WSAIASHIPG RTDNDIKNHW HSRLKKQLIL MGIDPVTHGL LPMPDMDSFI  60
ASSSITGSSI AAGWNTALAE SDLGRMSRDY MNSIADEDSW LRISQIGKLS AKIDNRVIGP  120
PMSACPSSEN SLLLPSISPD QLSLPDTSRW LHGFRKQIKR DFDCLKDSAE NNAFVQEALQ  180
FSNLERTSEE MPNIIQSSEI PSNLINETYV FHNELPSERE IMYSDYKPFY WQGMPEILQN  240
AIQYHSDGPF GSPVSTADIT AARSDLLNKG NEILYWDNLL KLTENGRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.14e-15myb domain protein 106